Selected Publication List from Peer Reviewed Journals and International Conferences

Amirhossein Tavanaei, Nishanth Anandanadarajah, and Rasiah Loganantharaj, A Deep Learning Model for Predicting Tumor Suppressor Genes and Oncogenes from PDB Structure. in the proceedings of the IEEE International Conference on Bioinformatics and Biomedicine,  December 2017 (to appear)

Rasiah Loganantharaj, and Thomas A. Randall. An insight into the limitations of Existing Approaches in Improving miRNA Target Prediction Accuracy. A book chapter in Bioinformatics in microRNA Research (Methods in Molecular Biology), Springer series in System Biology and Bioinformatics edited by Huang, J., Borchert, G.M., Dou, D., Huan, J., Lan, W., Tan, M., Wu, B. ISBN 978-1-4939-7044-5, June 4, 2017.

Bible PW, Sun HW, Morasso MI, Loganantharaj R, Wei L. The effects of shared information on semantic calculations in the gene ontology. Comput Struct Biotechnol J. 2017 Jan 30;15:195-211. doi: 10.1016/j.csbj.2017.01.009. eCollection 2017.
PMID: 28217262

Rasiah Loganantharaj and Thomas A. Randall. An Overview and comparison of tools for RNA-seq assembly in Computational Methods for Next Generation Sequencing Data Analysis (Wiley Series in Bioinformatics), 1st Edition, ISBN: 978-1-118-16948-3, October 2016

Tavanaei A, Maida A, Kaniymattam A, and Loganantharaj R. Towards Recognition of Protein Function based on its Structure using Deep Convolutional Networks,in the proceedings of the IEEE International Conference on Bioinformatics and Biomedicine,  December 2016. pp 145-149

Paul W Bible, Yuka Kanno, Lai Wei, Stephen R Brooks, John J O’Shea, Maria Morasso, Rasiah Loganantharaj, Hong-Wei Sun. ChIP-Seq Data Analysis Beyond Peak Calling: a User Friendly and Powerful Java Platform, PAPST, for Co-Localization Analysis. PLoS One. 2015 May 13;10(5).

Huang W, Loganantharaj R, Schroeder B, Fargo D, Li L. PAVIS: a tool for Peak Annotation and Visualization. Bioinformatics. 2013 Dec 1;29(23):3097-9. doi: 10.1093/bioinformatics/btt520.