Selected
Publication List from Peer Reviewed Journals and
International Conferences
Amirhossein
Tavanaei, Nishanth Anandanadarajah, and Rasiah
Loganantharaj, A Deep Learning Model for Predicting
Tumor Suppressor Genes and Oncogenes from PDB
Structure. in the proceedings of the IEEE
International Conference on Bioinformatics and
Biomedicine, December 2017 (to appear)
Rasiah Loganantharaj, and Thomas A. Randall. An
insight into the limitations of Existing Approaches
in Improving miRNA Target Prediction Accuracy. A
book chapter in Bioinformatics in microRNA Research
(Methods in Molecular Biology), Springer series in
System Biology and Bioinformatics edited by Huang,
J., Borchert, G.M., Dou, D., Huan, J., Lan, W., Tan,
M., Wu, B. ISBN 978-1-4939-7044-5, June 4, 2017.
Bible PW, Sun HW, Morasso MI, Loganantharaj R, Wei
L. The effects of shared information on semantic
calculations in the gene ontology. Comput Struct
Biotechnol J. 2017 Jan 30;15:195-211. doi:
10.1016/j.csbj.2017.01.009. eCollection 2017.
PMID: 28217262
Rasiah Loganantharaj and Thomas A. Randall. An Overview and
comparison of tools for RNA-seq assembly in Computational
Methods for Next Generation Sequencing Data Analysis
(Wiley Series in Bioinformatics), 1st Edition, ISBN: 978-1-118-16948-3, October 2016
Tavanaei A, Maida A, Kaniymattam A, and
Loganantharaj R. Towards Recognition of Protein
Function based on its Structure using Deep
Convolutional Networks,in the proceedings of the
IEEE International Conference on Bioinformatics and
Biomedicine, December 2016. pp 145-149
Paul W Bible, Yuka Kanno, Lai Wei, Stephen R Brooks,
John J O’Shea, Maria Morasso, Rasiah Loganantharaj,
Hong-Wei Sun. ChIP-Seq Data Analysis Beyond Peak
Calling: a User Friendly and Powerful Java Platform,
PAPST, for Co-Localization Analysis. PLoS One. 2015
May 13;10(5).
Huang W, Loganantharaj R, Schroeder B, Fargo D, Li
L. PAVIS: a tool for Peak Annotation and
Visualization. Bioinformatics. 2013 Dec
1;29(23):3097-9. doi: 10.1093/bioinformatics/btt520.